Biology, Medicine and Bioinformatics MCP Servers

MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments.

MCP server for spatial transcriptomics analysis with 60+ integrated methods covering cell annotation, deconvolution, spatial statistics, and visualization.

Healthcare service vendor matching for medical practices: 76,000+ curated vendors across 25 categories (billing, credentialing, EHR, compliance, legal) in all 50 US states.

Local-first continuous glucose monitor MCP server for Dexcom Developer API and FreeStyle Libre via LibreLink Up.

☕ ☁️ 🍎 🪟 🐧- real-time access to 1000 Genomes Project dataset

MCP server for accessing personal health and biometric data including sleep stages, heart rate, HRV, glucose, workouts, calendar, and location via the Fulcra Life API with OAuth2 consent.

Biomedical research MCP server providing access to PubMed, ClinicalTrials.gov, and MyVariant.info.

Typed, validated FHIR tools for healthcare AI agents — build, read, validate, and code FHIR resources from a patient bundle, with terminology lookup and machine-readable validation reports built for fix-and-retry. pip install healthchain[mcp]

Multi-agent MCP server for genomic analysis — specialized AI agents analyze raw DNA files across 16 databases (ClinVar, GWAS, gnomAD, CPIC, AlphaMissense, and more) and coordinate findings through shared MCP tools. Privacy-first, runs locally.

MCP server to interact with the UCSC Genome Browser API, letting you find genomes, chromosomes, and more.

An MCP server that provides access to medical information, drug databases, and healthcare resources. Enables AI assistants to query medical data, drug interactions, and clinical guidelines.

FHIR-first, read-only MCP server for the Practice Fusion EHR. Search patients and review appointments, conditions, medications, and lab results. SMART backend-services auth, audit-logged, HIPAA-conscious.

Race nutrition planning for endurance athletes. Calculates carb, sodium and fluid targets for marathons, ultras, cycling and triathlons. Returns personalised Lecka product recommendations by race type, conditions and athlete weight.

Healthcare billing AI for agents: ICD-10/CPT/HCPCS code lookup (81,769 codes with RVU + OPPS pricing), prior auth prediction, medical NER, claims validation, denial-risk scoring, HIPAA compliance auditing, and NPI/drug enrichment. 20 tools, 10 free credits then pay-per-call via credits or anonymous USDC (x402). npx @mymedi-ai/mcp-server

🐍 🏠 🍎 🪟 🐧 - A stateless, deterministic Bio-Robotics Core Engine converting biological data (UniProt API) to Cartesian G-code coordinates using the Model Context Protocol. 🐍 🏠 🍎 🪟 🐧

Multi-source academic + code + medical-regulatory trend monitoring (arXiv, PubMed, GitHub, Hugging Face, openFDA 510(k)/Recalls). Newspaper-style briefings, per-domain tuning, sandbox-safe Python launcher.

The only MCP server bridging DICOM, HL7v2, and FHIR in one package. Cross-standard mapping, Mirth Connect channel generation, vendor private tag decoding (GE, Siemens, Philips), and integration pattern knowledge. Built by a 19-year healthcare IT veteran. pip install dicom-hl7-mcp

MCP server to interact with the BioThings API, including genes, genetic variants, drugs, and taxonomic information.

MCP server providing a powerful bioinformatics toolkit for genomics queries and analysis, wrapping the popular gget library.

MCP server for a queryable database for aging and longevity research from the OpenGenes project.

MCP server for the SynergyAge database of synergistic and antagonistic genetic interactions in longevity.

32 tools for plant-genomics locus lookup across 11 public backends (Ensembl Plants, Phytozome, UniProtKB, KEGG, STRING-DB, Gramene, Europe PMC, QuickGO, NCBI BLAST, ATTED-II, BAR). Single-locus, parallel-batch, and cross-source synthesis variants; JSON output schemas and EDAM ontology tags on every tool. pipx install plant-genomics-mcp.

HEOR (Health Economics and Outcomes Research) MCP server with 7 tools for literature search across 41 medical data sources (PubMed, NICE, CADTH, ICER, etc.), cost-effectiveness modeling (Markov/PartSA/PSA), and HTA dossier preparation for pharmaceutical and biotech teams.

Map clinical terminology to OMOP concepts using LLMs for healthcare data standardization and interoperability.

A DICOMweb MCP server that exposes a DICOMweb-compliant DICOM archive to AI assistants, enabling search of studies, series and instances, metadata inspection, structured report reading, encapsulated PDF text extraction, and frame rendering.

Taiwan's first public MCP server for National Health Insurance (NHI) data — 234 rejection codes, 1,497 ICD-10→procedure mappings across 20 specialties, audit indicators (008/014/027/P043), and semantic wiki search over 8,232 chunks of official NHI documentation. Powered by OPDSTAR. Install: npx @opdstar/nhi-mcp.

Clinical research MCP server for trial coordinators and life sciences teams. Real-time access to PubMed (35M+ papers) and ClinicalTrials.gov (400K+ trials). No API key required.

Search PubMed and summarize biomedical literature, designed for AI health agents.

Ask your Oura Ring about sleep, readiness, activity, stress and heart rate in ChatGPT or Claude, in any language. Read-only, token-efficient, self-hosted; 10 task-oriented tools grouped by how people actually ask.

Unified MCP server for ICD-11 (WHO), LOINC, RxNorm, MeSH (NLM), ATC, CID-10 (Brazilian DataSUS), and optional SNOMED CT. 28 tools (34 with SNOMED) with structuredContent + outputSchema on every default tool. Hosted on Cloudflare Workers, listed on Smithery, and on npm.

AlphaFold MCP server integrating AlphaFold DB with eight additional public biomedical data sources, backed by a local SQLite knowledge graph for structural-confidence, variant, disease/phenotype, drug-target, and orthology workflows. uvx alphafold-sovereign-mcp

Auditable UniProt MCP server: 41 tools over the UniProt knowledgebase (entries, features, variants, PTMs, GO terms, cross-references) with per-query SHA-256 provenance and offline replay. uvx uniprot-mcp-server

An MCP server that provides access to exported data from Apple Health. Data analytics included.

MCP Server that connects AI agents to FHIR servers. One example use case is querying patient history in natural language.

Condition-aware ingredient, product & supplement safety for agents, with provenance on every answer — a verdict, an evidence tier (Gold/Silver/Bronze), and a verifiable citation — across breastfeeding, pregnancy, histamine/MCAS, rosacea, HS, allergy and fertility lenses. 9 tools incl. validate_claim (fact-check a claim against curated cited sources) and check_recall (FDA/consumer recall lookup by brand with Class I flagging and source URLs). Hosted at mcp.healthai.com.

The MCP server behind Constat: FDA & NHTSA regulatory-risk intelligence for agents — device compliance risk by 3-letter product code, parsed 510(k) premarket evidence with verbatim source quotes, predicate chains, postmarket drift signals, clearance-to-payment reimbursement pathways (NTAP/CPT/CMS), and NHTSA vehicle safety. 14 tools. Decision support, not regulatory advice. Hosted at constat.dev/api/mcp.

Sleep disruption cause classifier using The Longevity Vault's 5-cause framework. Identifies the biological mechanism behind 3am wakeups from symptom descriptions, with tracked links to the full interactive 3AM Decoder.

Model Context Protocol server for Fast Healthcare Interoperability Resources (FHIR) APIs. Provides seamless integration with FHIR servers, enabling AI assistants to search, retrieve, create, update, and analyze clinical healthcare data with SMART-on-FHIR authentication support.